PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26772
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 252aa    MW: 28445.4 Da    PI: 9.1337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26772genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017426123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ykC+ C+++  ++  L  H++ H
  Tp57577_TGAC_v2_mRNA26772  4 YKCKLCTRTLASSRALGGHMKAH 26
                               9*******************998 PP
2zf-C2H215.35.5e-05130151223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                kC +Cg  F+++  L++H + +
  Tp57577_TGAC_v2_mRNA26772 130 KCDKCGNNFKSSRALESHRNIC 151
                                7*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-5326IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5326No hitNo description
SMARTSM003550.097426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5124148No hitNo description
SMARTSM0035590129149IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-9165188IPR007087Zinc finger, C2H2
SMARTSM003550.61166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746166188IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MERYKCKLCT RTLASSRALG GHMKAHFATL RLPPPPSEDE RSKRNPKLIF GQNSEQKKLK  60
QSFLDSHSPP TETEPEPEPE QVSSISDTSP EEEEVAITLM LLSRDKWNKN SEVERSMEEI  120
KHKKVSGKQK CDKCGNNFKS SRALESHRNI CLQNEANLVA TTSSVHKCMI CFKVFGSGQA  180
LGGHKRSHFY PPLKKKLSFF DLNLPPSPEE NDPSVLSDAP QLYNCWGLEI NKKKWGTCLY  240
MHVRSSRLAS Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507870.12e-51zinc finger protein ZAT4
RefseqXP_017428081.12e-51PREDICTED: zinc finger protein ZAT4
TrEMBLA0A2K3MWT61e-156A0A2K3MWT6_TRIPR; Auxin-induced protein 5ng4-like
STRINGXP_007155662.11e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-30C2H2-like zinc finger protein