PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26793
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 350aa    MW: 40702.2 Da    PI: 6.7009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.3e-56141441129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtdeelv++yL+kk+++k+++l ++ik+vd+yk+ePwdL++  k+ + e++ewyfFs++dkky+t++r+nratk+g
  Tp57577_TGAC_v2_mRNA26793  14 VPPGFRFHPTDEELVDHYLRKKIASKRIDL-DIIKDVDLYKIEPWDLQElcKIGSdEQTEWYFFSHKDKKYPTSSRTNRATKAG 96 
                                69****************************.99**************954555553455************************* PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk+++s++ +l+g++ktLvfykgrap+g+k+dW+mheyrle
  Tp57577_TGAC_v2_mRNA26793  97 FWKATGRDKAIYSNHISLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 144
                                *************999******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-5910165IPR003441NAC domain
PROSITE profilePS5100558.88214165IPR003441NAC domain
PfamPF023658.7E-2915143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
LNLNYINMNN FSHVPPGFRF HPTDEELVDH YLRKKIASKR IDLDIIKDVD LYKIEPWDLQ  60
ELCKIGSDEQ TEWYFFSHKD KKYPTSSRTN RATKAGFWKA TGRDKAIYSN HISLIGMRKT  120
LVFYKGRAPN GQKSDWIMHE YRLETNENGT TPQEEGWAVC KVFKKRIAST MMRRMDDSPC  180
GYDDQVSFMQ SELESSPNRI SHASYQQHYP CKQEYYDRFQ YNIVINNDAN NFLQLPQLES  240
PKIPNNFQCS SSSTSHSLTT HQEQQYYSHQ QNMQMLYGGS NNDNQASAGL VEQSRDWRVL  300
DKFVASQLSH DQDASKESTS YCNVDEQIAL LASDESKKSE TSQIDHMWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-491316614169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621291e-104CR962129.2 Medicago truncatula chromosome 5 clone mth2-28m4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611265.20.0NAC domain-containing protein 7
RefseqXP_024639296.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-130NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2K3LAH90.0A0A2K3LAH9_TRIPR; NAC domain-containing protein (Fragment)
TrEMBLG7KG950.0G7KG95_MEDTR; Putative transcription factor NAM family
STRINGAES942230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-129NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]