PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2688
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 147aa    MW: 16706.9 Da    PI: 7.1329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2688genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-077292626
                              -SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                              C++f  tG+C+yGd+Ck+ H+
  Tp57577_TGAC_v2_mRNA2688 72 CSHFINTGFCRYGDSCKYFHP 92
                              ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.56E-141865No hitNo description
PfamPF062201.1E-91953IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.3386694IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-76994IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-47292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-57291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLLLIGMMIL CVSQCLDKNY YCEYCEKQFQ DTPSDRKRHS AGIQHQQAKA RWYDSFKPQQ  60
HNPNIPPNQP FCSHFINTGF CRYGDSCKYF HPNTNNNIQQ QHQPIINNTP GDVVVESMGL  120
SLGNLPPSLQ PPPEGGYPHI PFVDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495629.11e-62zinc finger CCCH domain-containing protein 3
RefseqXP_004495630.11e-62zinc finger CCCH domain-containing protein 3
SwissprotQ0JP113e-34C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2K3KEB01e-90A0A2K3KEB0_TRIPR; Zinc finger CCCH domain-containing protein 3-like
STRINGXP_004495629.15e-62(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.18e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]