PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA26884

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 180aa MW: 19906.7 Da PI: 9.1725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA26884	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.3	6.4e-14	110	180	1	77
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k l++s+v + ++ lp f+++h + +++t+tledesgr+++ k+i +k++ l++GW++F ++L eg Tp57577_TGAC_v2_mRNA26884 110 FVKSLVRSHVASCFWMGLPVAFCKRHLPD--KDTTITLEDESGREYKTKYIACKTG----LSAGWRQFSAVHKLLEG 180 89**********************534..5679***********777776....***********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.8E-15	102	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.22E-17	104	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.58E-20	108	180	No hit	No description
Pfam	PF02362	5.9E-11	110	180	IPR003340	B3 DNA binding domain
SMART	SM01019	4.9E-5	110	180	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.588	110	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MATQYDDGGV TVAFHGREVY EGVPISHFSK KSPLNNLQDK QNKAAENKYK LLNSPTTQSS 60 LMVKTWNIIF DCSSNKVTTD GALSRGEAIS SAVIQAEGLK SNLKPEFPSF VKSLVRSHVA 120 SCFWMGLPVA FCKRHLPDKD TTITLEDESG REYKTKYIAC KTGLSAGWRQ FSAVHKLLEG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA26884

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509147.1	1e-83	B3 domain-containing protein Os01g0234100-like
Swissprot	Q5KQI4	2e-30	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A1S2YSD0	2e-82	A0A1S2YSD0_CICAR; B3 domain-containing protein Os01g0234100-like
STRING	XP_004509147.1	4e-83	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1007	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-27	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA26884

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]