PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26965
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 230aa    MW: 25144.6 Da    PI: 7.4372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26965genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-083155125
                               TSSS-HHHHHHHHHHHHHTTTT-HH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWk 25
                               +g+W++eEd +l ++v+q+G ++W+
  Tp57577_TGAC_v2_mRNA26965 31 KGPWSAEEDRILTRLVEQHGARNWS 55
                               79**********************8 PP
2Myb_DNA-binding59.28.9e-1975117347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ 
  Tp57577_TGAC_v2_mRNA26965  75 PFSPQEDQTIIAAHTQYGNR-WATIARLLP-GRTDNAVKNHWNST 117
                                89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-2528114IPR009057Homeodomain-like
SMARTSM007171.6E-43069IPR001005SANT/Myb domain
PfamPF002496.9E-63165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-143274IPR009057Homeodomain-like
PROSITE profilePS5129424.4968122IPR017930Myb domain
SMARTSM007172.2E-1572120IPR001005SANT/Myb domain
CDDcd001671.22E-1275118No hitNo description
PfamPF002498.0E-1575117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2375121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNRSCSTTTS SSDSCSSESN PTNQNKLDRI KGPWSAEEDR ILTRLVEQHG ARNWSGKSCR  60
LRWCNQLSPT VEHRPFSPQE DQTIIAAHTQ YGNRWATIAR LLPGRTDNAV KNHWNSTLKR  120
RASCGGARGG DDSVTVAGTV SGGNERGSCS ALAFEDDPLT ALTLAPPGNV NGYCVEDREE  180
TVADRRFPSP SPESFPTGFW DVMKGVIAKE VREYVSSNFA HNNNNSGFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32281224108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501595.11e-103transcription factor MYB1-like
TrEMBLA0A2K3MPQ31e-145A0A2K3MPQ3_TRIPR; Transcriptional activator MYB-like protein
STRINGXP_004501595.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-51myb domain protein 77