PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA26966

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

CPP

Protein Properties

Length: 598aa MW: 66851.4 Da PI: 6.0094

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA26966	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.7	1.3e-14	441	479	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++C+Ckks+Clk+YCeCfaag++C C+C dC+Nk + Tp57577_TGAC_v2_mRNA26966 441 CRSCKCKKSRCLKNYCECFAAGAYCIGPCSCIDCSNKGD 479 789*********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.3E-13	439	480	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	11.816	440	490	IPR005172	CRC domain
Pfam	PF03638	2.0E-10	442	477	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MDAIENKNAP VSNLQKEDDS LFDYLNILSP LKTKTRVEAT LTLNSLGMDY SLLASKPKVS 60 SEDVNKIYRH EEALTDSTHG CQYSLGPSSQ HKKIELPQSM QYSPYSSEQR PLISTEEANW 120 ALELLGMQVP NGTNVQDDSM KDSVECGTYI PEVGSVQANI EGADCDSNHL SSITQLMNLP 180 PQSNTSSNYK MQNVEHVASS SKHEIEYNPS EPIAATDINQ TPNNLANVAL MDSNPIARGI 240 DELASIKRSI TRSCLNYQPE MTSLQMNAIN EKPLLHRKNT SYSQMCVLPR NDIYLNEKMS 300 SGRKPESPSC TSSLHLSARQ GHHLSPVPAP MERHLVPSEN DDFTKSSVHI PGEDFCRSTP 360 DLMSRVQFND LTNKLLDENM KMTSKVHSKD SIGLISSGSE HEMEEESVDF CQNIPKRKRK 420 TNTNVQFFRK RSNLTREGGA CRSCKCKKSR CLKNYCECFA AGAYCIGPCS CIDCSNKGDN 480 EDTVLQARRN NDSKVVTSAN SSPQFEIFLF QGSTKEKKFL ISGSLNFCKR YVFNVYVLSS 540 CVLMMLFFYS YPDFELLNHV SLFVQNTIGR IMLDIDMDIA LPAQLDTAPI EFYVIYG*

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MDAIENKNAP VSNLQKEDDS LFDYLNILSP LKTKTRVEAT LTLNSLGMDY SLLASKPKVS  60
SEDVNKIYRH EEALTDSTHG CQYSLGPSSQ HKKIELPQSM QYSPYSSEQR PLISTEEANW  120
ALELLGMQVP NGTNVQDDSM KDSVECGTYI PEVGSVQANI EGADCDSNHL SSITQLMNLP  180
PQSNTSSNYK MQNVEHVASS SKHEIEYNPS EPIAATDINQ TPNNLANVAL MDSNPIARGI  240
DELASIKRSI TRSCLNYQPE MTSLQMNAIN EKPLLHRKNT SYSQMCVLPR NDIYLNEKMS  300
SGRKPESPSC TSSLHLSARQ GHHLSPVPAP MERHLVPSEN DDFTKSSVHI PGEDFCRSTP  360
DLMSRVQFND LTNKLLDENM KMTSKVHSKD SIGLISSGSE HEMEEESVDF CQNIPKRKRK  420
TNTNVQFFRK RSNLTREGGA CRSCKCKKSR CLKNYCECFA AGAYCIGPCS CIDCSNKGDN  480
EDTVLQARRN NDSKVVTSAN SSPQFEIFLF QGSTKEKKFL ISGSLNFCKR YVFNVYVLSS  540
CVLMMLFFYS YPDFELLNHV SLFVQNTIGR IMLDIDMDIA LPAQLDTAPI EFYVIYG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA26966

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630895.1	1e-141	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2K3LQK3	0.0	A0A2K3LQK3_TRIPR; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20561	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-11	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA26966