PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27008
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CPP
Protein Properties Length: 422aa    MW: 45780.9 Da    PI: 7.7684
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.41.4e-08190230241
                        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkC.edCkNkee 41 
                                e++ C+C+kskCl   C C ++   C+e+C+C  +C+Nke 
  Tp57577_TGAC_v2_mRNA27008 190 EERICKCRKSKCLSHVCPCLSSSLRCTENCECaIECMNKEG 230
                                6788****************************88****986 PP
2TCR26.41.4e-08323363241
                        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkC.edCkNkee 41 
                                e++ C+C+kskCl + C C ++   C+e+C+C  +C+Nke 
  Tp57577_TGAC_v2_mRNA27008 323 EERICKCRKSKCLSLVCPCLNSSFRCTENCECtIECMNKEG 363
                                6788****************************77****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.00587128IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011148.4E-6189231IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.237190363IPR005172CRC domain
PfamPF036381.1E-5192229IPR005172CRC domain
SMARTSM011140.016239273IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011141.4E-5322364IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-6325362IPR005172CRC domain
SMARTSM011140.0013372410IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.3E-4376408IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MKTPPFSNLE EVSETKERQS GPSEADDGDI NELPMVPPSR KRCINLNVSP SNSDESSERN  60
TEIPSSTSSV PFPASQPEKT LSQVAESTEI KCDCCHIKCE NYICQCRQAR VYCSPLCTCS  120
DCQNKPEALQ LSSTSLPLSS SQVHSMSQGP ALLESLLRPS AIGVQTTKEF APSLTLQIAG  180
EGSNKSILKE ERICKCRKSK CLSHVCPCLS SSLRCTENCE CAIECMNKEG NEAVILQARM  240
AVGCSCRKTS CKNQKCSCFQ VGVGCSLICT XXXXXXXXXX QGPALLESHL RPSAIGVQTT  300
KEFAPSLTLQ IAGEGSNQSI LKEERICKCR KSKCLSLVCP CLNSSFRCTE NCECTIECMN  360
KEGNEAVILQ ARMAVRCSCS KTSCKSQKCS CFKVGVGCSL ICTCQGCXXX XXXXXXGKKL  420
Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LQY91e-36A0A2K3LQY9_TRIPR; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.15e-10Tesmin/TSO1-like CXC domain-containing protein