PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27151
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 364aa    MW: 40907.6 Da    PI: 6.4437
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27151genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66.1e-102788157
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETT CS
                         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksg 57
                               f+k+lt+sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r+ +g
  Tp57577_TGAC_v2_mRNA27151 27 FCKTLTTSDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIERDLHGNEWKFRHIFRGEKG 88
                               99*****************************8544443..47999************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-291286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-192188IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-82688No hitNo description
PfamPF023622.8E-82788IPR003340B3 DNA binding domain
SMARTSM010190.01227120IPR003340B3 DNA binding domain
SuperFamilySSF1019368.76E-30190262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-20198262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-9204262No hitNo description
PfamPF023625.5E-8205262IPR003340B3 DNA binding domain
SMARTSM010190.017205292IPR003340B3 DNA binding domain
PROSITE profilePS502949.573286327IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.3E-11291362IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.79E-12297362IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.909297327IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
LYLQQEQKEA YLPAELGILS KQPTNYFCKT LTTSDTSTHG GFSVPRRAAE KVFPPLDFSQ  60
QPPAQELIER DLHGNEWKFR HIFRGEKGVL DLELWHACAG PLVSLPAVGS RVIISLVDCV  120
LHSFTNGENK VVVSTNKEVD GHIPNYPSLP PQLVCQLHNL TMHADVETDE VYAQMTLQPL  180
NAQEQKEAYL PAELGIPSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP  240
PAQELIARDL HGNEWKFRHI FRVLWTPDMT DLRGVKMCLL LSGGQPMTVD APIKEDAWIP  300
EMNLLATGSW DKTIKYWDTR QSNPVHTQQL PDRCYTMSVR HSLMVVGTAD RNLIIFNLQN  360
PQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-65726247217Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27151
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593869.13e-99auxin response factor 6
RefseqXP_010647449.11e-101PREDICTED: auxin response factor 6 isoform X1
RefseqXP_019074220.11e-101PREDICTED: auxin response factor 6 isoform X2
RefseqXP_024632506.13e-99auxin response factor 6
RefseqXP_024632507.13e-99auxin response factor 6
SwissprotQ9ZTX82e-93ARFF_ARATH; Auxin response factor 6
TrEMBLA0A2K3PD912e-99A0A2K3PD91_TRIPR; Auxin response factor
TrEMBLA0A2Z6MMZ81e-100A0A2Z6MMZ8_TRISU; Auxin response factor
TrEMBLA0A445BCC31e-103A0A445BCC3_ARAHY; Uncharacterized protein
STRINGAES641201e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1392445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-95auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]