PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2716

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 133aa MW: 15306.1 Da PI: 8.6298

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2716	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.6e-07	58	78	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f +G+C+yGd+Ck+ H+ Tp57577_TGAC_v2_mRNA2716 58 CSHFINMGFCRYGDSCKYFHP 78 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.83E-9	6	47	No hit	No description
PROSITE profile	PS50103	15.338	52	80	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-7	55	80	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.3E-5	58	77	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MPIRKYYCEK QFQDTLSDRK RHSAGIQHQQ AKARWYDSFK PQQQQQHNPN IPPNQPFCSH 60 FINMGFCRYG DSCKYFHPNT NNNIQQQHQP IINNTPRDVV VESMGVSLGN LPPSLQPPPE 120 GGYPHIAFVD WG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2716

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495629.1	6e-60	zinc finger CCCH domain-containing protein 3
Refseq	XP_004495630.1	6e-60	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	7e-31	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2K3LWG9	3e-85	A0A2K3LWG9_TRIPR; Zinc finger CCCH domain-containing protein 3-like
STRING	XP_004495629.1	2e-59	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-24	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2716

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]