PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27183
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 159aa    MW: 18475.2 Da    PI: 6.5174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27183genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-092065346
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                WT e+ +l+ +a    + +   +W+ Ia+ +  g+++ q+k+++ +
  Tp57577_TGAC_v2_mRNA27183 20 QWTREDNKLFEKALITVPENssnRWEEIAEQVS-GKSASQVKDHYED 65
                               6********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-61769IPR001005SANT/Myb domain
SuperFamilySSF466894.24E-121975IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-52065IPR009057Homeodomain-like
PfamPF002493.8E-72066IPR001005SANT/Myb domain
PROSITE profilePS500907.1892167IPR017877Myb-like domain
CDDcd001673.77E-62167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MHQKTIDMAA AAARTLWPTQ WTREDNKLFE KALITVPENS SNRWEEIAEQ VSGKSASQVK  60
DHYEDLVHDI LEIESGRVEL PNYPDDLDVN SGSRMSRHGD NEKQKKRKGK PWTEEEHKXX  120
XXXXXXXXXX XXXXXXXXXX XXXXIQRRGM ETHFKILC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1421831173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184395.13e-34transcription factor DIVARICATA-like
TrEMBLA0A392LZ493e-61A0A392LZ49_9FABA; Transcription factor DIVARICATA-like
STRINGGLYMA10G42450.11e-33(Glycine max)
STRINGAES843681e-33(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-28MYB family protein