PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2722

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 187aa MW: 21498.9 Da PI: 5.8324

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2722	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44	4.7e-14	85	137	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN L ++l++ ++ + Tp57577_TGAC_v2_mRNA2722 85 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENNNLVDKLNHVSESHD 137 688***************************************99999888665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	83	146	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-12	85	143	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.0E-12	85	157	No hit	No description
SuperFamily	SSF57959	5.91E-13	85	135	No hit	No description
CDD	cd14702	6.44E-21	86	137	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVPSEIRGIN YLPAPPENSF QIPQNFVLPQ NEIPNFHLNN LLNSLPTNYH YPSAGHEFAP 60 PSCLSSNSTT SDEADELQFN IIDERKHRRM ISNRESARRS RMRKQKHLDE LWSQVVRLRT 120 ENNNLVDKLN HVSESHDKVV QENARLKEET FDLRQMVADM QIGNSFPCNM EDFGEIPCSS 180 SPHKDD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2722

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013448026.1	1e-115	basic leucine zipper 43
Swissprot	Q9FMC2	2e-37	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A2Z6LSF3	1e-131	A0A2Z6LSF3_TRISU; Uncharacterized protein
STRING	XP_004490322.1	5e-97	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-52	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2722

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]