PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27227
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 858aa    MW: 93881.1 Da    PI: 6.4105
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27227genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181875457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Tp57577_TGAC_v2_mRNA27227 18 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                               6789****************************************************97 PP
2START174.75.8e-551653722204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l  +
  Tp57577_TGAC_v2_mRNA27227 165 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPT-KVAEILKDRLSWYRDCRCVEVLSIV 247
                                6899******************************************************.8999999999*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                 +g  g+++lm+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p    s+++vRae+lpSg+li+p+++g+s 
  Tp57577_TGAC_v2_mRNA27227 248 PTGggGTIELMYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLNASTGGPPgpsSPNFVRAEMLPSGFLIRPCEGGGSI 331
                                *************************************************9999888899************************* PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                +++v+hvdl+ ++++++lr+l++s+ + ++k + a+lq+ +
  Tp57577_TGAC_v2_mRNA27227 332 IHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIR 372
                                **************************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511276IPR001356Homeobox domain
SMARTSM003894.1E-151480IPR001356Homeobox domain
CDDcd000863.04E-161777No hitNo description
SuperFamilySSF466891.33E-161779IPR009057Homeodomain-like
PfamPF000465.1E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181975IPR009057Homeodomain-like
CDDcd146862.41E-669108No hitNo description
PROSITE profilePS5084825.853155356IPR002913START domain
CDDcd088759.08E-70159375No hitNo description
Gene3DG3DSA:3.30.530.204.4E-22164347IPR023393START-like domain
SMARTSM002341.0E-49164374IPR002913START domain
PfamPF018521.8E-52165372IPR002913START domain
SuperFamilySSF559613.71E-36165376No hitNo description
SuperFamilySSF559613.3E-5428510No hitNo description
SuperFamilySSF559613.3E-5540614No hitNo description
PfamPF086703.6E-46711856IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MALSMHKDMN NQMDAGKYVR YTPEQVEALE RVYSECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGYMKQQ  120
IHTASAATTT DNSCDSVVMS GQNQQQNPNQ RPQRDASNPA GLLAVAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGIA ARACGLVSLE PTKVAEILKD RLSWYRDCRC  240
VEVLSIVPTG GGGTIELMYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLNASTG  300
GPPGPSSPNF VRAEMLPSGF LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKLTIAALQH IRQIAQESSG EIQYGGGRQP AVLRTFSQRL CSWLLIHNVS SLMAMIFRGF  420
NDAVNGFVDD GWSLLGNDGV EDVTIAVNSS PNKFLGSNYS TMFPPFGGGV LCAKASMLLQ  480
NVPPALLVRF LREHRSEWAD YGVDAYSAAS LKASPYAVPC ARPGGFPSSQ VILPLAPTIE  540
HEEFLEVVRI EGHAFSPEDV ALARDMYLLQ LCSGIDESSV GACAQLVFAP IDESFADDAL  600
LLPSGFRVIP LDPKSDGSAS RTLDLTSTLG SSNARAAGDG EASGYNLRSV LTIAFQFTFE  660
NHLRDNVAAM ARQYVRSVVG SVQRVAMVIA PARPGSQLGP KSHPGSPEAH ALARWISRSY  720
RIHTGADLFR VEPAASGDAI LKQLWQHSDA IMCCSVKTNS SPIFTFSNQA GLDMLETTLV  780
ALQDIMLDKV LDEAGRKILC SEFSKIMQQG YAYLPAGLCV SSMNRPVSYE QAIAWKVLND  840
DDANHCIAFM FINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27227
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486450.10.0homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A2Z6P6J70.0A0A2Z6P6J7_TRISU; Uncharacterized protein
STRINGXP_004486450.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]