PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27255
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 702aa    MW: 80212.4 Da    PI: 6.0504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27255genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.82.7e-161973256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               ++  ++t+ q+ +Le++ +++++p++++ ++LA++lgL+ +qVk+WFqN+R+  k
  Tp57577_TGAC_v2_mRNA27255 19 SPYNRLTTAQTARLENFMKECNHPNEAQQQQLAEELGLQPKQVKYWFQNKRTLLK 73
                               667789*********************************************8665 PP
2START109.26.7e-352004234206
                                HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                      START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                                  a+qel +++ ++ep+W  +s         ++ + + q f++++       s e ++ sg+   + ++lv  +ld+  +W   
  Tp57577_TGAC_v2_mRNA27255 200 TLAMQELERLVRVNEPFWINFSnthqderYTLDHERYCQFFPKNNHirgdnVSKESSKYSGIIGLDGMQLVDMFLDSD-KWRDL 282
                                5689******************655444444444555555555444***988899***********************.99999 PP

                                -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                      START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                                ++    k+et++v++ g      gal lm+ e+  lsplv  R+f ++Ry++q   ++wvi dvS ds ++++  +++  + ++
  Tp57577_TGAC_v2_mRNA27255 283 FPtivtKVETTKVLEIGlpgnrdGALLLMNEEMHILSPLVRpREFNIIRYCKQVDVDVWVITDVSFDSSRPNT--PPLSHSWKH 364
                                988888********************************9866****************************986..79999999* PP

                                SEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 149 pSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                                pSg++i++++n  + vtwvehv++++ l  h ++r +v + +  ga  w + lqr ce+
  Tp57577_TGAC_v2_mRNA27255 365 PSGCIIREMPNKSCLVTWVEHVEVEDMLHtHHIFRDFVVNNTLYGAESWIKELQRMCER 423
                                ***************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-15969IPR009057Homeodomain-like
SuperFamilySSF466891.59E-151182IPR009057Homeodomain-like
PROSITE profilePS5007115.4351575IPR001356Homeobox domain
SMARTSM003897.7E-141779IPR001356Homeobox domain
CDDcd000867.23E-141876No hitNo description
PfamPF000461.1E-131973IPR001356Homeobox domain
PROSITE profilePS5084837.737188426IPR002913START domain
SuperFamilySSF559615.91E-25189424No hitNo description
CDDcd088751.40E-78192422No hitNo description
SMARTSM002341.0E-15197423IPR002913START domain
PfamPF018522.5E-28200423IPR002913START domain
Gene3DG3DSA:3.30.530.206.7E-8260391IPR023393START-like domain
SuperFamilySSF559614.67E-7455627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKRICGSRDD DINNDERRSP YNRLTTAQTA RLENFMKECN HPNEAQQQQL AEELGLQPKQ  60
VKYWFQNKRT LLKNQHEKQH NNNLRLENER LRNENLLMKE ALKATKCEPC GGPPFPKEEH  120
QHYMHKMQQE NAELKKEFEN VSKVSKSFME NNELDNSPMV YQTSSHLHHL SNLIMREDMS  180
VNRSTQCYDE EKTMMLQIAT LAMQELERLV RVNEPFWINF SNTHQDERYT LDHERYCQFF  240
PKNNHIRGDN VSKESSKYSG IIGLDGMQLV DMFLDSDKWR DLFPTIVTKV ETTKVLEIGL  300
PGNRDGALLL MNEEMHILSP LVRPREFNII RYCKQVDVDV WVITDVSFDS SRPNTPPLSH  360
SWKHPSGCII REMPNKSCLV TWVEHVEVED MLHTHHIFRD FVVNNTLYGA ESWIKELQRM  420
CERFFSFYVE TVPAGESIGA KLANIIYAVI QTIEGRRSVM KLADRMVKIF CECLRMAGQL  480
EFQHLNIESI IGGVRVSLRQ VTDIGQGIIV AAATTLCLPL PAEYVFDFLK DPTKRYQWDV  540
MAYENPMYEI GHVSNGLYPG NCTTIFQPYN PSENSTMILQ ESFTSPVGSY VIYAPIDTIS  600
MNAVICGEDS TMLPIIPTGF VVCPYAQPNA TFEASNSIGS SSSSGGVGRG GADTLLTLAY  660
QILTCNPNGI DQHQNMEAFA TMNTLLTTSV LKVRGALMNS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486568.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A2Z6MI780.0A0A2Z6MI78_TRISU; Uncharacterized protein
STRINGXP_004486568.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-128homeodomain GLABROUS 11