PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27264

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YA

Protein Properties

Length: 217aa MW: 24068.5 Da PI: 7.135

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27264	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.2	2.4e-32	121	177	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF Tp57577_TGAC_v2_mRNA27264 121 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-TRNRKPYLHESRHLHALKRARGCGGRF 177 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-36	119	180	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.026	120	180	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	122	177	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-23	123	145	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	125	145	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.5E-23	154	177	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
LDRVHVNQEN MTSSTHDLTD NEGDGQQQSE SQMQQPISAN GISHAGIDTQ IVQYAAPPQL 60 GAGHAMVPPP YPYPDPYYRS VFAPYDAQPY QLQPYGGHPM ANLQLMGIQH PGVPLPTDAV 120 EEPVFVNAKQ YHGILRRRQS RAKAESEKKV TRNRKPYLHE SRHLHALKRA RGCGGRFLNS 180 KKDENQQDEV GSADNSHSNI NLNSERNDLA PSDKNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-21	120	185	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27264

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146024	0.0	BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBank	JQ918271	0.0	JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003594522.1	1e-121	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	6e-64	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2Z6NGU8	1e-126	A0A2Z6NGU8_TRISU; Uncharacterized protein
STRING	XP_004486451.1	1e-117	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27264

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]