PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27301
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 200aa    MW: 20988.1 Da    PI: 8.099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000141032223
                               EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                C  Cg++F+  ++L+ H+ + H
  Tp57577_TGAC_v2_mRNA27301 10 ACDQCGEVFPKIESLELHQAVrH 32
                               69*****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280932IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995937IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.105.0E-844189IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.07E-1544190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
LPIPRSTVCA CDQCGEVFPK IESLELHQAV RHADSVKSRA ASTTKKNPRC AADGNELLRF  60
HSTTLSCALG ARGSSALCAA VPGCGVCTII RHGFQNKGGV KTNASSGMAH DNSVGRIGED  120
SRRAMLVCRV IAGKVKRAAE EGAAPVTLEE ENVAFDSVAG NAGIYSNLED LTVFNPKAIL  180
PCFVVIYKEP DVTMSIKSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27301
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499248.11e-102uncharacterized protein LOC101513058
TrEMBLA0A2Z6MNL71e-120A0A2Z6MNL7_TRISU; Uncharacterized protein
STRINGXP_004499248.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-67C2H2-like zinc finger protein