PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27365
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 159aa    MW: 17998.2 Da    PI: 9.3537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27365genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.27.5e-223485256
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                               +++GVr+++ +g+++AeIrdps++g  +r++lg+f+taeeAa+a+++a+ +l+g+
  Tp57577_TGAC_v2_mRNA27365 34 RFRGVRRRP-WGKYAAEIRDPSKQG--TRIWLGTFDTAEEAARAYDRAAFNLRGH 85
                               69*******.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-323493IPR001471AP2/ERF domain
PfamPF008471.6E-153485IPR001471AP2/ERF domain
CDDcd000188.04E-313492No hitNo description
PROSITE profilePS5103224.5133492IPR001471AP2/ERF domain
SMARTSM003801.9E-383498IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-243593IPR016177DNA-binding domain
PRINTSPR003671.1E-113546IPR001471AP2/ERF domain
PRINTSPR003671.1E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRNICHTQEE TKLMEDHLKG KQGKEEKAGK DEVRFRGVRR RPWGKYAAEI RDPSKQGTRI  60
WLGTFDTAEE AARAYDRAAF NLRGHLAILN FPSEYYSKIR GSPPYPPHLA PPSYTSSSSH  120
HASGSSSGPQ HRPIFEFECL DDKILEELLG SEEVKKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-31281448114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468695.13e-76ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3L6X51e-102A0A2K3L6X5_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGGLYMA20G34560.14e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-37ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]