PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27552
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 363aa    MW: 40163.4 Da    PI: 4.547
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27552genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.51.8e-34149203155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Tp57577_TGAC_v2_mRNA27552 149 KPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 203
                                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.597146206IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-32146205IPR009057Homeodomain-like
SuperFamilySSF466895.73E-18147203IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25149203IPR006447Myb domain, plants
PfamPF002496.3E-10151202IPR001005SANT/Myb domain
PfamPF143791.2E-20236280IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSSYPSSSM QAASINSNIR SVGHMFSTSA DQLPDNVPFA SASEIHSTPF PQESDVLSWG  60
TDPFDDILQF PDAPIQNDHV EYSGSDVLGG NAKITDFKEW VDQLMSVDES PQPNWNELLS  120
DNNIAEQYVP SKEVNGLPNS SVSTTSQSKP RMRWTPELHE AFVEAVNQLG GSEKATPKGV  180
LNLMKVEGLT IYHVKSHLQK YRTARYKPEP SEGIEEKKLT SIDEMTTIDL KTPKGITEAL  240
RLQMELQKRL HEQLEIQRNL QIQIENQGKH LQMMFEQQIK SNDPSAPLSS VVAPPTVENL  300
ENKNEGHEKL GTNGSTPDNK SEGSSQDTST KQKGDDAKVT DELELEEGQF VAPPSKRAKT  360
DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-32149207260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27552
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590977.10.0protein PHR1-LIKE 1
SwissprotQ8GUN56e-77PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A2K3P2P20.0A0A2K3P2P2_TRIPR; Two-component response regulator ARR2
STRINGAES612280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.33e-79G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]