PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27587
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 481aa    MW: 55108.8 Da    PI: 6.1445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27587genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.21.3e-5661331128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhPtdeelv++yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgy
  Tp57577_TGAC_v2_mRNA27587   6 LPPGFRFHPTDEELVSYYLKRKINGRRIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGY 88 
                                79****************************.99***************6434445667************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatgkd++v s ++++vg+kktLv+y+grap+g++t Wvmheyrl
  Tp57577_TGAC_v2_mRNA27587  89 WKATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133
                                ************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-654157IPR003441NAC domain
PROSITE profilePS5100561.8536157IPR003441NAC domain
PfamPF023657.2E-317133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RRIELEIIPE VDLYKCEPWD LPGKSLLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GSRTGWVMHE YRLDERECDN PSAGLQDAYA LCRIFKKSTV IVPKVGEQYV NNVTRHANHM  180
TSDQQSSSIE LYSEGGRDEV LESSNYLMPW DANSIQNMNG NNNFNNNGGI TRDNGNWTQF  240
LSEDLLNLPT SSSSFPNYGS TPNYPPSKVD IALECARMQH RFSMPPLEVE DFPQVGFNSE  300
MKMTQLASSS MCGTRNETDI LQEILSVAQA SQELINNQSN YSHPFGGNEN YATHHENDFT  360
FMVGNNNYNM NDHMNSMRYD DKAWEDPNMR SIEIGDLDXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXILKHKGP KLQMNLNVAQ SFSSEPFDQI  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57115912167NO APICAL MERISTEM PROTEIN
1ut4_B3e-57115912167NO APICAL MERISTEM PROTEIN
1ut7_A3e-57115912167NO APICAL MERISTEM PROTEIN
1ut7_B3e-57115912167NO APICAL MERISTEM PROTEIN
3swm_A3e-57115915170NAC domain-containing protein 19
3swm_B3e-57115915170NAC domain-containing protein 19
3swm_C3e-57115915170NAC domain-containing protein 19
3swm_D3e-57115915170NAC domain-containing protein 19
3swp_A3e-57115915170NAC domain-containing protein 19
3swp_B3e-57115915170NAC domain-containing protein 19
3swp_C3e-57115915170NAC domain-containing protein 19
3swp_D3e-57115915170NAC domain-containing protein 19
4dul_A3e-57115912167NAC domain-containing protein 19
4dul_B3e-57115912167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518221e-111AC151822.29 Medicago truncatula clone mth2-32h21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600640.10.0NAC domain-containing protein 86
SwissprotQ9FFI51e-109NAC86_ARATH; NAC domain-containing protein 86
TrEMBLG7J7Z70.0G7J7Z7_MEDTR; NAC transcription factor-like protein
STRINGAES708910.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-120NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]