PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27652
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21571.9 Da    PI: 7.1942
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27652genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.3e-1037611943
                               HHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF 19 gilKKAeELSvLCdaevaviifsst 43
                               g+lKK +ELS+LC++e+++ii+ ++
  Tp57577_TGAC_v2_mRNA27652 37 GLLKKVNELSTLCGVEACIIIYPEN 61
                               9********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00722870IPR002100Transcription factor, MADS-box
PfamPF003191.8E-83761IPR002100Transcription factor, MADS-box
CDDcd002662.85E-153795No hitNo description
SuperFamilySSF554558.37E-123795IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRFTPVFPVF TGFTTSGSAK LFGPVLAPVS GRIVLFGLLK KVNELSTLCG VEACIIIYPE  60
NSAQPDIWPP GLRTRNVLGK FMSLPELERN KKMLDSEGFA NQTLEKTQKI LMKQIEKNQK  120
KSGIFISDTY KNLECDTRDL NINEANNWKG FIEKRLNEVE QKLISIKIQA EEETENGIEA  180
VNGIANLGHV ADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LYC91e-135A0A2K3LYC9_TRIPR; Agamous-like mads-box protein agl80-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-19M-type_MADS family protein