PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27779
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 251aa    MW: 27931.8 Da    PI: 9.978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27779genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31178236259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Tp57577_TGAC_v2_mRNA27779 178 TDDYSWRKYGQKPIKGSPHPRGYYKCSSVkGCPARKHVERALDDSSMLVVTYEGEHNHS 236
                                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-15139175IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33165236IPR003657WRKY domain
PROSITE profilePS5081130.928172238IPR003657WRKY domain
SuperFamilySSF1182903.79E-27174237IPR003657WRKY domain
SMARTSM007744.2E-38177237IPR003657WRKY domain
PfamPF031063.5E-27179235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTVELIMEYR NNKFQENAVE EAASGLQSID KLIKLLSSNS KSNSMEFTEI DQMDYKTVAD  60
VAVSKFKNVI SLLNNQNRTR TGHARFRRAP LPSSSATLSE TIVYHATPLQ QIPPLAPKTI  120
IDFSHNSSAN SFMSSSCSLK KKCSSSSGHC HCSKKRKMRL RRVVRVAAIS LKMADIPTDD  180
YSWRKYGQKP IKGSPHPRGY YKCSSVKGCP ARKHVERALD DSSMLVVTYE GEHNHSLSTT  240
EANNLILESS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23165237273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139156KKKCSSSSGHCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27779
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258372e-53CT025837.1 Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611676.11e-128probable WRKY transcription factor 15
SwissprotO221761e-73WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A2K3L4R30.0A0A2K3L4R3_TRIPR; WRKY transcription factor
STRINGAES946341e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-46WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]