PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27844

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 259aa MW: 29382.6 Da PI: 6.9936

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27844	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.8e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l ++ +++G +W t +++ g++R++k+c++rw++yl Tp57577_TGAC_v2_mRNA27844 14 RGSWSHEEDVILRNYLNKHGLAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89****************889**********************97 PP
2	Myb_DNA-binding	43.4	7.8e-14	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd ++ + G++ W++Ia+ ++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA27844 71 FTEEEDNIIFTLYSTIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111 9****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.252	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.33E-26	12	109	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-10	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-13	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-21	15	69	IPR009057	Homeodomain-like
CDD	cd00167	3.85E-7	16	62	No hit	No description
PROSITE profile	PS51294	19.367	63	117	IPR017930	Myb domain
SMART	SM00717	1.2E-12	67	115	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-22	70	116	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-12	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.56E-10	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGRSPCCDKS KVKRGSWSHE EDVILRNYLN KHGLAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLRPHIKLGG FTEEEDNIIF TLYSTIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKRFLAQ 120 NSSTSNNIYT FSNTTSTATT SSDHFSSTLT FQPQVEQTFV FDPKQNTTCF DSYNVLDLDQ 180 TTINNINLPM KMESEPFYTG NILSSSCSTT PTTKEISSAP FLEEQKNNHN QWFGYDHDDA 240 FLHEFVLDDY LNHGPSSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-25	14	117	7	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27844

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013453206.1	1e-130	transcription factor MYB87
TrEMBL	A0A072UBN7	1e-129	A0A072UBN7_MEDTR; Myb transcription factor
STRING	XP_004503043.1	1e-116	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-65	myb domain protein 36

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27844