PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27919
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 694aa    MW: 77414.1 Da    PI: 8.3145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27919genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001177100123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ykC +C++ F ++ n++rH r+ H
  Tp57577_TGAC_v2_mRNA27919  77 YKCDKCTREFCSPINYRRHKRVyH 100
                                9********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.69977105IPR007087Zinc finger, C2H2
PROSITE patternPS00028079100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MPVAKLTASG TPNFMKTEDG NDSLDTLIRQ AVGKEPFLSF PRAADRPAQW IQLFHALEQQ  60
QEIPGWPLFS PAKVQLYKCD KCTREFCSPI NYRRHKRVYH RLKKLDKDSK KNRDLLGAYW  120
DKLSIEEAKE AVSFENVTLE EVPGSSILQA LSTLRTQQGF YSLPHNYLRA GFSLLDIVQS  180
RSSSFPISSQ KLFDILDDSS EKTFLCGTAV SMQRHVFDGE AGKIGLEPKN LVACTSFLLE  240
QKLVNAWLAD KDAEALRCQK LLMEEEEAAQ KRKAEILERK RQKKLRQKAR SRLENDTEIK  300
GSISSTGEDV SPEEGSLAAC DFEAHREDVF ADHASSPHVT YHFLDTNECV DGDTQSGYDC  360
DTDQNMEPQT SERDAQSGYD CDTDRNLERQ TSHRHNPRRT MAARWQGLPK SQRTIANGLY  420
ASQNSQKSKF GVIPKYGNGT NRDQRAAPTV NGGKVWSRKP KPETDAVVLK TRLHKEPAKI  480
KNNEVLIGSV SVTLANCSRS ECHLVTSQED SLVENLADQN VAQEKPIKTD SFHGGNNRSR  540
VKLWRPVSQH GTKNPMPLES VGTEVDVVYG KDDQNLSVQS SLRLCNIDGG DIGSGNKSHI  600
HAAKAFLAQR WKEAISSNHV ELVISPDPEP PGFQPVQDCE IASRRSSNTE RYSILANTEN  660
LLPATTGVAK SKPRVKPDKG IKIKYIPKLK AAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277284ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27919
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467550.0AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592255.10.0uncharacterized protein LOC11419752
TrEMBLA0A2Z6N8X40.0A0A2Z6N8X4_TRISU; Uncharacterized protein
STRINGAES625060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein