PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27961

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 83aa MW: 9364.53 Da PI: 4.7392

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27961	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	14	63	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRrng+lKKA+EL +LCdaev v+ifsst kly+++s Tp57577_TGAC_v2_mRNA27961 14 RIDNSTNRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTAKLYDFAS 63 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.973	5	65	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-39	5	64	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-28	5	65	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.24E-37	6	64	No hit	No description
PROSITE pattern	PS00350	0	7	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-29	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	14	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-29	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-29	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
LEIEMGRGKI QIRRIDNSTN RQVTFSKRRN GLLKKAKELA ILCDAEVGVV IFSSTAKLYD 60 FASTRRNFGE VEEEEEEEEV GD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	5	64	1	60	MEF2C
5f28_B	2e-21	5	64	1	60	MEF2C
5f28_C	2e-21	5	64	1	60	MEF2C
5f28_D	2e-21	5	64	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27961

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT485795	6e-66	CT485795.2 Medicago truncatula chromosome 5 clone mte1-33h11, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003615360.2	2e-34	MADS-box transcription factor 23 isoform X4
Refseq	XP_028802153.1	2e-34	agamous-like MADS-box protein AGL16 isoform X3
Swissprot	A2RVQ5	1e-31	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A2K3MTX6	1e-38	A0A2K3MTX6_TRIPR; MADS-box transcription factor 27-like protein (Fragment)
STRING	AES98316	2e-35	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-33	AGAMOUS-like 16

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27961

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]