PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28016
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 285aa    MW: 30876.5 Da    PI: 8.6017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013108130123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C+k F++   L  H  +H
  Tp57577_TGAC_v2_mRNA28016 108 HRCSVCNKAFPSYQALGGHKASH 130
                                79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.018108130IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-13108132IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-9108181No hitNo description
PROSITE profilePS501579.432108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM003550.19159181IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-13159183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411159181IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALELQSLNS SPTGAPTPYP TFKPQQQDQE IHERDSFVKK KRSKRPRISN PPTEEEYLAL  60
CLIMLAQSGN KNNKINGSDD FSHHQTESSP SSSQLQQPSP PSPVKLNHRC SVCNKAFPSY  120
QALGGHKASH RKSSSENQTT VVNDTVSVTT ATVTSGKMHE CSICHKSFPT GQALGGHKRC  180
HYDGGNHNNN NNSNSNVNAN NNSGITISDG AAASSSISHR GFDLNLPAPL TEFWSPLGLG  240
GGDSKKKXXX XXXXXXXQEV ESPLPVTAKR PRLFSEEENN DKTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265993.11e-117zinc finger protein ZAT10-like
TrEMBLA0A2K3LEM71e-150A0A2K3LEM7_TRIPR; Zinc finger protein ZAT10-like (Fragment)
STRINGXP_004496881.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-33C2H2 family protein