PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28062
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-PHD
Protein Properties Length: 978aa    MW: 107171 Da    PI: 4.4019
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28062genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.91.4e-128278711256
                                HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++L + F++n+yp ++++e LA++lgLt +qV  WF N R   +
  Tp57577_TGAC_v2_mRNA28062 827 VQRLYKSFKENQYPERSTKESLAQELGLTFQQVDKWFGNTRWSFR 871
                                789**************************************8766 PP
2PHD36.88.8e-13484539151
                                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                +C+ C+     ++++++lCdg C++ +H+ Cl+++l +e++p g  +wlC+ C++k
  Tp57577_TGAC_v2_mRNA28062 484 FCAKCQTkvLATNNDIILCDGaCDRGYHQLCLDPPLLTEDIPPGdeSWLCPGCDCK 539
                                6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.54E-13474542IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-12481538IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.62482539IPR019787Zinc finger, PHD-finger
PfamPF006285.6E-10484539IPR019787Zinc finger, PHD-finger
CDDcd155044.62E-27484536No hitNo description
SMARTSM002491.2E-9484537IPR001965Zinc finger, PHD-type
PROSITE patternPS013590485536IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.1E-13808867IPR009057Homeodomain-like
SMARTSM003895.5E-12811877IPR001356Homeobox domain
SuperFamilySSF466892.31E-12812876IPR009057Homeodomain-like
PROSITE profilePS5007113.507813873IPR001356Homeobox domain
PfamPF000464.2E-10826871IPR001356Homeobox domain
CDDcd000863.84E-12827873No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MIDEKSNEVS VSMTENSVIE LPEPPRPCSE NTCQTLESSC LQQSTSEQVC LSGDKSEIKC  60
PQNVENEAGE MSDAVTPFVV VEEQTQSVPA QVNSDSVNEL LDPPSGDVKE NIKNVSGETS  120
DVVTGFVEDH TESVPAQVDT DSVNELLDTL SGDITKNISS KNEPGDKTDV VTGFVEDHTE  180
PVPAQVNTDS VNEPLDTPSR DVTKNISSKN EPGEMSDLVT GYVEDHKQSD PAQVNTDSVN  240
EPLDTASGDV TKNISSKNEP GEMSDAITGL VEDQTQSVPA QVNTNSWKNE ILDMPSGDAA  300
KNISSDCSER KSNNPPQLRE KHAYKKTSKL SKKYILRSLG SSDRTLRSRT KDDKPKDPEP  360
INTVADVNND ETKTKERKKK KKKKTRKEGI NDQFSRIRAQ LRYYLNRISY EQNLIDAYSA  420
EGWRGSSMEK LKPEKEIQRA KSEILRRKLK IRDLFQNLDS LCAEGRLPES LFDSEGEIDS  480
EDIFCAKCQT KVLATNNDII LCDGACDRGY HQLCLDPPLL TEDIPPGDES WLCPGCDCKD  540
DCIELVNDLL GTSLSLTDTW ERVFPEAATA AGSILDHNLG LPSDDSDDDD YNPDGPDDGP  600
EDVEVEEGGS SSDESEYASA SEKLEDSHHE DQYMGLPSED SEDDDYDPEA PILSDKASEE  660
SSSSDFTSDS EDLAATIKDN MSTGQDGDVT SALLGDVKNF KGSSRKNHKK PSIADELSSL  720
QEPGQEDLTP VSGKRNVERL DYQKLYEETY HSDTSDDEDW AATATPSRKK KNSGKMTPVS  780
PNGNASNNSR HTGTNNSPTK TLEGCTESGS RGKKRGSSYK KLGEVAVQRL YKSFKENQYP  840
ERSTKESLAQ ELGLTFQQVD KWFGNTRWSF RHSPRMQASP GSNASQQATD SGAENKGERG  900
NASQQATDSG AENKGENEHE LVSQETSEGK SRTRSSKKRK RLSESQTSEA GPVHSGPTPD  960
SSPRVDTGNT MKKKKGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381ERKKKKK
2377383KKKKKKK
3378386KKKKKKTRK
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061172e-65AP006117.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT09H13, TM0200, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496910.10.0homeobox protein HAT3.1
SwissprotQ049961e-127HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A2K3PA020.0A0A2K3PA02_TRIPR; Homeobox KN domain protein
STRINGXP_004496910.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]