PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28063
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-PHD
Protein Properties Length: 1042aa    MW: 114039 Da    PI: 4.3824
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28063genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.81.6e-128919351256
                                HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++L + F++n+yp ++++e LA++lgLt +qV  WF N R   +
  Tp57577_TGAC_v2_mRNA28063 891 VQRLYKSFKENQYPERSTKESLAQELGLTFQQVDKWFGNTRWSFR 935
                                789**************************************8766 PP
2PHD36.79.5e-13548603151
                                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                +C+ C+     ++++++lCdg C++ +H+ Cl+++l +e++p g  +wlC+ C++k
  Tp57577_TGAC_v2_mRNA28063 548 FCAKCQTkvLATNNDIILCDGaCDRGYHQLCLDPPLLTEDIPPGdeSWLCPGCDCK 603
                                6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-13538606IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.4E-12545602IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.62546603IPR019787Zinc finger, PHD-finger
PfamPF006286.1E-10548603IPR019787Zinc finger, PHD-finger
CDDcd155047.99E-27548600No hitNo description
SMARTSM002491.2E-9548601IPR001965Zinc finger, PHD-type
PROSITE patternPS013590549600IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.4E-13872931IPR009057Homeodomain-like
SMARTSM003895.5E-12875941IPR001356Homeobox domain
SuperFamilySSF466892.48E-12876940IPR009057Homeodomain-like
PROSITE profilePS5007113.507877937IPR001356Homeobox domain
PfamPF000464.5E-10890935IPR001356Homeobox domain
CDDcd000863.49E-12891937No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MNISTGNLAS NNDCTTEKMG TEHCDLSKKA AQIDNECLDN EQKVLGAVLT DSVINEKSNE  60
VSVNMIDEKS NEVSVSMTEN SVIELPEPPR PCSENTCQTL ESSCLQQSTS EQVCLSGDKS  120
EIKCPQNVEN EAGEMSDAVT PFVVVEEQTQ SVPAQVNSDS VNELLDPPSG DVKENIKNVS  180
GETSDVVTGF VEDHTESVPA QVDTDSVNEL LDTLSGDITK NISSKNEPGD KTDVVTGFVE  240
DHTEPVPAQV NTDSVNEPLD TPSRDVTKNI SSKNEPGEMS DLVTGYVEDH KQSDPAQVNT  300
DSVNEPLDTA SGDVTKNISS KNEPGEMSDA ITGLVEDQTQ SVPAQVNTNS WKNEILDMPS  360
GDAAKNISSD CSERKSNNPP QLREKHAYKK TSKLSKKYIL RSLGSSDRTL RSRTKDDKPK  420
DPEPINTVAD VNNDETKTKE RKKKKKKKTR KEGINDQFSR IRAQLRYYLN RISYEQNLID  480
AYSAEGWRGS SMEKLKPEKE IQRAKSEILR RKLKIRDLFQ NLDSLCAEGR LPESLFDSEG  540
EIDSEDIFCA KCQTKVLATN NDIILCDGAC DRGYHQLCLD PPLLTEDIPP GDESWLCPGC  600
DCKDDCIELV NDLLGTSLSL TDTWERVFPE AATAAGSILD HNLGLPSDDS DDDDYNPDGP  660
DDGPEDVEVE EGGSSSDESE YASASEKLED SHHEDQYMGL PSEDSEDDDY DPEAPILSDK  720
ASEESSSSDF TSDSEDLAAT IKDNMSTGQD GDVTSALLGD VKNFKGSSRK NHKKPSIADE  780
LSSLQEPGQE DLTPVSGKRN VERLDYQKLY EETYHSDTSD DEDWAATATP SRKKKNSGKM  840
TPVSPNGNAS NNSRHTGTNN SPTKTLEGCT ESGSRGKKRG SSYKKLGEVA VQRLYKSFKE  900
NQYPERSTKE SLAQELGLTF QQVDKWFGNT RWSFRHSPRM QASPGSNASQ QATDSGAENK  960
GERGNASQQA TDSGAENKGE NEHELVSQET SEGKSRTRSS KKRKRLSESQ TSEAGPVHSG  1020
PTPDSSPRVD TGNTMKKKKG K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439445ERKKKKK
2441447KKKKKKK
3442450KKKKKKTRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061172e-65AP006117.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT09H13, TM0200, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496910.10.0homeobox protein HAT3.1
TrEMBLA0A2K3PA020.0A0A2K3PA02_TRIPR; Homeobox KN domain protein
STRINGXP_004496910.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain