PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28119
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family E2F/DP
Protein Properties Length: 343aa    MW: 37834.1 Da    PI: 5.1729
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28119genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.5e-2788171271
                    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkeknei 67 
                                ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i+k +k+ei
  Tp57577_TGAC_v2_mRNA28119  88 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpsnggvmspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEI 167
                                789********...*****999********************************************************.***** PP

                    E2F_TDP  68 rwkg 71 
                                +w+g
  Tp57577_TGAC_v2_mRNA28119 168 QWRG 171
                                **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.2E-1255342IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.1E-4683177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-3587171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-2589171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.24E-2190172IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.39E-43176279IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.41E-41178289No hitNo description
SMARTSM011385.9E-67178340IPR014889Transcription factor DP, C-terminal
PfamPF087814.7E-40179286IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGTRPQQSCV DEEDEELLGC GTTISGQSGS TSRSAGLPSS RSEQTTGTAA GNNKLNHLDI  60
QDDDAASQGV VASKRKKRGQ RAVGGDKNGR GLRQFSMKVC EKVESKGRTT YNEVADELVA  120
EFSDPSNGGV MSPDQQQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWR GLPHTSQNDI  180
EELKKERLGL RNRIERKAAY LQELEEQFVG LQNLIQRNEQ LYCSGNPPSG GVSLPFILVQ  240
TRPHATVEVE ISEDMQLVHF DFNSSPFELH DDNYVLKAMN FGESERPQSD NVTHNIADGG  300
EGSSMSGMYQ SQVPPSVSNM SIRPPTSPPL PGILKARVKQ EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3981176193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456629.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-148DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2Z6PH150.0A0A2Z6PH15_TRISU; Uncharacterized protein
STRINGXP_004505605.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-144Transcription factor DP