PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2827
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 149aa    MW: 17082.3 Da    PI: 5.9388
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2827genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB91.77e-2952141392
                     NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                                +d++lPi+ +++im ++lP++a+is+dake++q cvsef   + sea+++c+ e+r  +n++dl+ a+  l fe+y++pl  + 
  Tp57577_TGAC_v2_mRNA2827  52 TDDNLLPITKLTKIMERALPQDAQISDDAKESMQLCVSEFARIIMSEANKRCKIERRMIVNSEDLIRAVKMLKFEHYAKPLFNFY 136
                               5799********************************************************************************* PP

                     NF-YB  88 kkyre 92 
                               ++yr 
  Tp57577_TGAC_v2_mRNA2827 137 QNYRS 141
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-2745142IPR009072Histone-fold
SuperFamilySSF471131.15E-2153141IPR009072Histone-fold
PfamPF008081.9E-1557120IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MCFCLNLVVL QLANQLEINE SQRNKDNDDN NNNNNNNNIG VEIQQQNLPP TTDDNLLPIT  60
KLTKIMERAL PQDAQISDDA KESMQLCVSE FARIIMSEAN KRCKIERRMI VNSEDLIRAV  120
KMLKFEHYAK PLFNFYQNYR SGSSSGQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-2154140591Transcription factor HapC (Eurofung)
4g92_B1e-2154140591Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466407.12e-30transcriptional activator hap3
TrEMBLA0A2K3N6X25e-88A0A2K3N6X2_TRIPR; Nuclear transcription factor Y subunit B-3-like protein
STRINGXP_004498435.11e-27(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.15e-26nuclear factor Y, subunit B2