PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28352
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 110aa    MW: 12843.9 Da    PI: 10.1324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28352genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.36.5e-23464259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                               +Dg++WrKY + e+   ++prsYYrC++     C++kkkv++ +++p+v+e+tY+g H ++
  Tp57577_TGAC_v2_mRNA28352  4 KDGFTWRKYVKQEILRVKYPRSYYRCSHMkldACRAKKKVQQLRDNPNVFEVTYNGAHSCR 64
                               7***************************98889*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-21264IPR003657WRKY domain
SuperFamilySSF1182901.11E-19364IPR003657WRKY domain
SMARTSM007743.9E-23365IPR003657WRKY domain
PfamPF031061.4E-21464IPR003657WRKY domain
PROSITE profilePS5081116.111566IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MPRKDGFTWR KYVKQEILRV KYPRSYYRCS HMKLDACRAK KKVQQLRDNP NVFEVTYNGA  60
HSCRISLTIP SLFLAAQRIS KDMTPTTMPA PTSYLEWLSQ EKEDDVKVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-145641069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615896.22e-33uncharacterized protein LOC11409580
TrEMBLA0A2K3JNZ83e-40A0A2K3JNZ8_TRIPR; WRKY transcription factor 55-like protein (Fragment)
STRINGXP_009363895.11e-27(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-23WRKY DNA-binding protein 55