PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28436

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 220aa MW: 24863.5 Da PI: 7.3079

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28436	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.1e-10	148	196	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h ++Er+RR ++ ++f eL +P++ kK Ka+i+ +++++k+Lq Tp57577_TGAC_v2_mRNA28436 148 KTLHTMVERQRRLELAHKFIELSATIPHS-----KKTYKASIVMGTINHVKQLQ 196 678***********************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.24E-6	145	199	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.0E-13	146	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-13	146	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.316	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	148	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-7	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEQSWEDIWH LHTEMDIENW LEMCQQEENY LGDYMVHQSS LEAPAVAETV TEDTLQEICH 60 IPTVVSSEMI VCSERSPKLL HLSTSAKTCI SASFDNSAII PLKPSVTSSK PPLPPCSAKK 120 RTSEKLKSSE AKAITKEGEN KIIGSRSKTL HTMVERQRRL ELAHKFIELS ATIPHSKKTY 180 KASIVMGTIN HVKQLQKRVM ELEQQNKRGK EPIYDHTPQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28436

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024631425.1	1e-53	transcription factor bHLH19 isoform X1
TrEMBL	A0A2Z6MVU5	1e-133	A0A2Z6MVU5_TRISU; Uncharacterized protein
STRING	AES68218	2e-43	(Medicago truncatula)
STRING	AES68221	9e-44	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18975	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28436