PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28440
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 118aa    MW: 13306.4 Da    PI: 10.5392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28440genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.0002595116425
                                HHHHHHHHHHHHHHHHHHHHHC CS
                        HLH   4 ahnerErrRRdriNsafeeLre 25 
                                 h + Er+RR+r+ + f eL+e
  Tp57577_TGAC_v2_mRNA28440  95 HHTMLERKRRRRLAHQFIELKE 116
                                69******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MELPWENNWP LHTEIAQQSS LVGGAAATNE LSPPPLPREL LPPSSSNCMT LPFIPAAAMS  60
KPPICYRKKR SSENLNSLKA KREKKIIRSG SEIEHHTMLE RKRRRRLAHQ FIELKEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106ERKRRRRL
2100104RKRRR
3101106KRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-