PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28460
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 125aa    MW: 14042 Da    PI: 9.0933
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28460genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.63.9e-13208731104
                       GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                                as  gd +qRla+yf+ +L+ rl+  ++ +yk+l++ ++     ++ l+a+k++  +sP+ ++s+++ N++Ile
  Tp57577_TGAC_v2_mRNA28460  20 ASLCGDGLQRLAHYFADGLEVRLSA-GTPMYKQLQSLSS-----ADMLKAYKVYITASPFQRMSNFLSNRTILE 87 
                                8899********************9.8999987776666.....59***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.9391125IPR005202Transcription factor GRAS
PfamPF035141.3E-102087IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
DGKSPSIFCA NSEPSSHYFA SLCGDGLQRL AHYFADGLEV RLSAGTPMYK QLQSLSSADM  60
LKAYKVYITA SPFQRMSNFL SNRTILERPD GPPRLPITGI DLPHPGFRPA ERVEEMGRRL  120
EKYFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28460
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507177.14e-47scarecrow-like protein 30
TrEMBLA0A2K3JKZ39e-64A0A2K3JKZ3_TRIPR; GRAS family transcription factor (Fragment)
STRINGXP_004507177.11e-46(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-24SCARECROW-like 14