PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28663
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23783.1 Da    PI: 9.6412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-151152344
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               i ++s+r  tf +R+ngi+KK +E+S+LC+++++ ii+ +++
  Tp57577_TGAC_v2_mRNA28663 11 ITSNSKRRETFRRRKNGIMKKLNEISTLCGIDACTIIYDQNN 52
                               789999999****************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.371152IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-21185IPR002100Transcription factor, MADS-box
CDDcd002664.02E-26285No hitNo description
PRINTSPR004046.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARKKVKIAY ITSNSKRRET FRRRKNGIMK KLNEISTLCG IDACTIIYDQ NNPQAEVWPS  60
DLGVKSVLFR FGSLPEFARS KKMVDQEAFL RESIEKACDQ WKKQREVTRK KEMVNIVDHY  120
IRSGEFNSNL MSKDDLNDLS SFIHDNYLKE INRKMKGMQI ETQEPVRNGG DVMNGTEERE  180
IIGHAQGLVS AGEDHIGNMG QREPRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKIAYITSNSKRRETFRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190082.19e-79agamous-like MADS-box protein AGL80
TrEMBLA0A2K3NSI91e-130A0A2K3NSI9_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004499496.14e-78(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-37AGAMOUS-like 80