PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2867

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 300aa MW: 33932.8 Da PI: 5.8919

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2867	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	62.3	9.1e-20	12	44	6	38
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrr 38 +cprC s+ntkfCyynnysl+qPryfCk+Crr Tp57577_TGAC_v2_mRNA2867 12 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRR 44 58******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-15	12	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	20.095	12	75	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-14	14	44	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MESEWKANEI TPNCPRCGSS NTKFCYYNNY SLTQPRYFCK GCRRXXXXXX XXXXXXXXXX 60 XXXXPVGGGC RKNRRGNNKT LLRQQSFDSL TFKNSDTIGH HSYDPILRTN NIISSSSCSS 120 LVNTDRPNID LALVYANFLN KKPDSQNNSD QMEKRPFDPL ENSRLSNVEV GSSSLNLSEL 180 ELGFKGCLSL QEQLQSTTVT HFSEFNSMQT LQKDRIDHCN IIHDDGVNFE LPPLPGEEDS 240 SSHVLWSNSE MMMNLPFQVT QPPPPPPPLL GPDQIHDADL LIGNWSPFDF TRDNSFSRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2867

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467842.1	1e-144	dof zinc finger protein DOF3.5
TrEMBL	A0A072VIR1	1e-142	A0A072VIR1_MEDTR; Dof domain zinc finger protein
STRING	GLYMA10G10142.1	5e-88	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-20	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2867