PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28690
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 300aa    MW: 31392.7 Da    PI: 9.8926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28690genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07101126227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                k ++C+ f     Ck+Gd+C+FaHg+
  Tp57577_TGAC_v2_mRNA28690 101 KSRICNKFNSAEGCKFGDKCHFAHGE 126
                                5689999999999***********96 PP
2zf-CCCH35.32e-11267290226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                kt+lC +fa+ G C +G++C+FaHg
  Tp57577_TGAC_v2_mRNA28690 267 KTKLCENFAK-GSCTFGEKCHFAHG 290
                                8*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035623562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3053563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-63660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-73760IPR000571Zinc finger, CCCH-type
PfamPF146082.44060No hitNo description
SuperFamilySSF902291.83E-798130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.35799127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1299131IPR000571Zinc finger, CCCH-type
SMARTSM003560.001899126IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.45E-14165238IPR004088K Homology domain, type 1
SMARTSM003225.9E-12168238IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.6E-15168237IPR004088K Homology domain, type 1
PROSITE profilePS5008413.963169233IPR004088K Homology domain, type 1
PfamPF000131.6E-10171234IPR004088K Homology domain, type 1
CDDcd001054.43E-14171234No hitNo description
Gene3DG3DSA:4.10.1000.105.9E-15263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8265295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751265292IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6265291IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9267290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDARKRGRVD ASVNVNGGSV KKTKQEMDSL SSGVGSKTKP CTKFFSIAGC PFGEGCHFLH  60
FVPGGYNAVA QMMNLKSAAP PRNVPAPPPV SNNGSAPHSV KSRICNKFNS AEGCKFGDKC  120
HFAHGEWELG KPYAPSIDDH RPMAPTTVNR MVGRTEAPSG LGTTSFGANS TAKISVEAAL  180
AGAIIGKGGV NSKQICRQTG VKFSIRDHES DPNLRNIELE GTFDQIAQAS NMVKDLLLTL  240
SASAPPKSTP GVPSAPGAAA QPGRNIKTKL CENFAKGSCT FGEKCHFAHG AAELRKLGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467665.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K3P3760.0A0A2K3P376_TRIPR; Zinc finger CCCH domain-containing protein 14-like
STRINGXP_004497899.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-51C3H family protein