PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28753
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 266aa    MW: 28736.8 Da    PI: 5.6219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28753genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-184999155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Tp57577_TGAC_v2_mRNA28753 49 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 99
                               59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-1749108No hitNo description
PROSITE profilePS5103221.87850108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2850109IPR001471AP2/ERF domain
PfamPF008472.5E-115099IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1850110IPR016177DNA-binding domain
SMARTSM003808.7E-3250114IPR001471AP2/ERF domain
PRINTSPR003676.7E-95162IPR001471AP2/ERF domain
PRINTSPR003676.7E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
LHLYIMVKTE INKINKEKSK AMQQKTSSSS SSSSSSSSSA RNASNEMKKK YKGVRMRSWG  60
SWVSEIRAPN QKTRIWLGSY STAEAAARAY DAALLCLKGS SASNLNFPLE ISSHFIPQDN  120
TAMSPKSIQR VAASAAAAAA SAVSNNDIAI NTPPLSPPPN HASTTTTTTS SSIVSSPSMS  180
SSPSDQIDDD VSLFSSFGLH SSCGGDYQAN ESMAMMDSWY GFDDLQSPKH VDQMMLNGAL  240
FDFDSTQVLL DDWYEEGDIS LWNFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1449113468ATERF1
3gcc_A3e-1449113468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28753
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467572e-68BT146757.1 Medicago truncatula clone JCVI-FLMt-5M3 unknown mRNA.
GenBankCR5387232e-68CR538723.1 M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614739.26e-99ethylene-responsive transcription factor ERF014
SwissprotQ9SFE44e-43ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A2K3NBF31e-133A0A2K3NBF3_TRIPR; Ethylene-responsive transcription factor erf012-like protein
STRINGAES976972e-93(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.13e-30ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]