PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28779
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 131aa    MW: 15520.3 Da    PI: 10.6876
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28779genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.12.3e-117441956
                               HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               F+  + p++++r+e+Ak+l+L+++qVk+WF  +R k k
  Tp57577_TGAC_v2_mRNA28779  7 FQTLQQPNRKQRREIAKELDLNKQQVKNWFAYKRRKVK 44
                               9999******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.48E-5644No hitNo description
Gene3DG3DSA:1.10.10.601.6E-9644IPR009057Homeodomain-like
PfamPF000461.3E-8744IPR001356Homeobox domain
SuperFamilySSF466891.8E-9752IPR009057Homeodomain-like
PROSITE profilePS5007112.017746IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MCHAIIFQTL QQPNRKQRRE IAKELDLNKQ QVKNWFAYKR RKVKVAKQRE VCATLRTENQ  60
RISEMNKMMK DALKNIVLCK SCRKSQILKE LRLENQQLKE RIEKMSKLLS MYEEKQEVSL  120
ELKLGPPTSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28779
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7IMI73e-24G7IMI7_MEDTR; Homeobox KN domain protein
STRINGAES648235e-25(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2302924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.28e-17HD-ZIP family protein