PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2879
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 207aa    MW: 22955.9 Da    PI: 10.068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2879genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-1453103155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y GVr+++ +grW AeI+d s   ++ r +lg+f+ ae+Aa  ++ a++ l+g
  Tp57577_TGAC_v2_mRNA2879  53 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAAMSYDSAARILRG 103
                               5899******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-2953113No hitNo description
PROSITE profilePS5103219.75754111IPR001471AP2/ERF domain
PfamPF008474.5E-854103IPR001471AP2/ERF domain
SMARTSM003802.8E-3254117IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1854112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-2754112IPR001471AP2/ERF domain
PRINTSPR003678.9E-75566IPR001471AP2/ERF domain
PRINTSPR003678.9E-77793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENKDTSKLP NQTHQTHNNK NMSLISHEID KSNENKKTST LKKIPKISNK GQKKYLGVRQ  60
RPSGRWIAEI KDSSQKLRLW LGTFDRAEDA AMSYDSAARI LRGRNAKTNF PNTHEQDFSI  120
LGKNPRAFQL LKHAMMKNHA VSSSSSVYSS FMMPWKNNDQ LDDAIVEETI VCSVADEGEG  180
SAIGCSGITF GSSKVYSSVV VAPSFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1653111160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609147.11e-114ethylene-responsive transcription factor 3
TrEMBLA0A2K3N7E41e-116A0A2K3N7E4_TRIPR; Ethylene-responsive transcription factor erf086-like protein
STRINGAES913441e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-26related to AP2 11