PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28819

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WOX

Protein Properties

Length: 772aa MW: 87547.9 Da PI: 4.6507

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28819	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8e-15	42	100	2	55
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 r+R+t+ ++q+++Le+ F++ + p +ee++++ ++l + +V++WFqNr+a++ Tp57577_TGAC_v2_mRNA28819 42 RPRWTPRPQQVQILEDIFNSgMMSPPKEEIKKIRERLleygPVGHVNVFYWFQNRKARK 100 89***************99***************99*************96 PP
2	Homeobox	53.7	3.5e-17	468	528	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ ++p +++++++ ++l + e++V++WFqNr+ + k+ Tp57577_TGAC_v2_mRNA28819 468 KPRWNPKPEQIRVLEAIFNSgMMNPPRDDIKKIREQLqeygPIGEANVFYWFQNRKSRSKN 528 89***************99************99999**************995 PP
3	Wus_type_Homeobox	94.3	1.1e-30	41	101	2	62
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRer 62 +r+RWtP+p+Q++iLe++++sG+ +P+keei++i+++L eyG ++ NVfyWFQNrkaR+ Tp57577_TGAC_v2_mRNA28819 41 PRPRWTPRPQQVQILEDIFNSGMMSPPKEEIKKIRERLLEYGPVGHVNVFYWFQNRKARKL 101 589********************************************************85 PP
4	Wus_type_Homeobox	105.1	4.4e-34	467	530	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi++Le++++sG+ +P+++ i++i+++L+eyG i+++NVfyWFQNrk+R+++k+ Tp57577_TGAC_v2_mRNA28819 467 PKPRWNPKPEQIRVLEAIFNSGMMNPPRDDIKKIREQLQEYGPIGEANVFYWFQNRKSRSKNKH 530 689**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-7	37	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-10	37	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.43	38	103	IPR001356	Homeobox domain
SMART	SM00389	2.4E-5	40	107	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-12	42	100	IPR001356	Homeobox domain
CDD	cd00086	0.00373	50	103	No hit	No description
SuperFamily	SSF46689	8.98E-12	463	531	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.932	464	529	IPR001356	Homeobox domain
SMART	SM00389	2.2E-9	466	533	IPR001356	Homeobox domain
CDD	cd00086	3.38E-8	467	530	No hit	No description
Pfam	PF00046	1.1E-14	468	527	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-7	468	528	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MVSSNKHWPS MFKRPNYENS QHRVNSFLTG VHKEERTSQP PRPRWTPRPQ QVQILEDIFN 60 SGMMSPPKEE IKKIRERLLE YGPVGHVNVF YWFQNRKARK LKQTKPKNMN PRKRKSKKTQ 120 NASSSSSPHA SSNEIVVPNN IELPTTNNEV VNLTNDSPND TIFGDQNLGI DDFDIPIETD 180 FLLSTPPLFS FPSEFSNMTQ QLPQQNVDVN PNLLNHEIFM NCANGIPMNE QYDQGNIQDH 240 EAAMNIMQQQ EEDPQLMSLC VTSNLLNDDD IALPPLPPII IDAPVVDPFS ITQFQGVTSN 300 FSLNDDSTLP SIVIDAPDTD PFSITQFQDV GEPDHFMAKC TVSINNYIID VDVGPFNIRQ 360 IFGDEAILVD SSGQLVLTDE WGVTLESLQH GGSYFLIRFD QSSWVRRTNI GLACSRSPTI 420 TIRSMASTPH FYPRQRRCPY FVSILFYVKI TTLYYLGCHG DERTPEPKPR WNPKPEQIRV 480 LEAIFNSGMM NPPRDDIKKI REQLQEYGPI GEANVFYWFQ NRKSRSKNKH RNFAKRKNKN 540 SVPPNNNSII SAQTITNDNV SGNQNLATDY FHTPIETNFQ LSTPPLFSFP NQFSNMTQQL 600 PQQNVDVPNL LNHEILIPMN EQYDQGNIQD HEATMNIMQQ LQEDPQLISL GVTSNSLNDD 660 STLPPLPPIV DAPFTDPFSI TQLQGVGEAD DFSKKCIVSI NNQIFKVDVG PFNICQNFGN 720 QAVLVDSSGQ TILTDEWGMT LDSLQHGASY YLENETNVGD EDDEDDEVQK K*

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MVSSNKHWPS MFKRPNYENS QHRVNSFLTG VHKEERTSQP PRPRWTPRPQ QVQILEDIFN  60
SGMMSPPKEE IKKIRERLLE YGPVGHVNVF YWFQNRKARK LKQTKPKNMN PRKRKSKKTQ  120
NASSSSSPHA SSNEIVVPNN IELPTTNNEV VNLTNDSPND TIFGDQNLGI DDFDIPIETD  180
FLLSTPPLFS FPSEFSNMTQ QLPQQNVDVN PNLLNHEIFM NCANGIPMNE QYDQGNIQDH  240
EAAMNIMQQQ EEDPQLMSLC VTSNLLNDDD IALPPLPPII IDAPVVDPFS ITQFQGVTSN  300
FSLNDDSTLP SIVIDAPDTD PFSITQFQDV GEPDHFMAKC TVSINNYIID VDVGPFNIRQ  360
IFGDEAILVD SSGQLVLTDE WGVTLESLQH GGSYFLIRFD QSSWVRRTNI GLACSRSPTI  420
TIRSMASTPH FYPRQRRCPY FVSILFYVKI TTLYYLGCHG DERTPEPKPR WNPKPEQIRV  480
LEAIFNSGMM NPPRDDIKKI REQLQEYGPI GEANVFYWFQ NRKSRSKNKH RNFAKRKNKN  540
SVPPNNNSII SAQTITNDNV SGNQNLATDY FHTPIETNFQ LSTPPLFSFP NQFSNMTQQL  600
PQQNVDVPNL LNHEILIPMN EQYDQGNIQD HEATMNIMQQ LQEDPQLISL GVTSNSLNDD  660
STLPPLPPIV DAPFTDPFSI TQLQGVGEAD DFSKKCIVSI NNQIFKVDVG PFNICQNFGN  720
QAVLVDSSGQ TILTDEWGMT LDSLQHGASY YLENETNVGD EDDEDDEVQK K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28819

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626123.1	3e-87	WUSCHEL-related homeobox 9
TrEMBL	A0A2K3LFX8	0.0	A0A2K3LFX8_TRIPR; WUSCHEL-related homeobox 9-like protein (Fragment)
STRING	AES78136	3e-85	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	6e-43	WUSCHEL related homeobox 8

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28819