PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28827
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 561aa    MW: 62619 Da    PI: 7.009
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28827genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.85.6e-09205226122
                    G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                k+r++Wtp LH++Fv av+qLG
  Tp57577_TGAC_v2_mRNA28827 205 KARVVWTPALHRKFVAAVNQLG 226
                                68*******************6 PP
2Response_reg70.95.2e-24231271105
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl vdD+++ +++l+++l k +y +v++a+++  al+ll+e++  +Dl++  + mp+mdG++ll+     e++lp+i+++a+++
  Tp57577_TGAC_v2_mRNA28827  23 VLAVDDDRTCLKILEKLLLKCQY-HVTTAQNAITALNLLRENKnnFDLVISNVHMPDMDGFKLLELVGL-EMDLPVIMFSANDD 104
                                799********************.***************888888*******************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HH CS
               Response_reg  83 eedalealkaGakdflsKpfdpe 105
                                ++++l+ +  Ga d+l Kp+  +
  Tp57577_TGAC_v2_mRNA28827 105 PKMVLKGITHGACDYLLKPVILK 127
                                *******************8655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.82E-3320144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.8E-4020175No hitNo description
SMARTSM004487.5E-2921133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.46522137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2123129IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.22E-2045137No hitNo description
Gene3DG3DSA:1.10.10.603.5E-9202230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
LFWVLEDHKM NDLRDKFPIG MRVLAVDDDR TCLKILEKLL LKCQYHVTTA QNAITALNLL  60
RENKNNFDLV ISNVHMPDMD GFKLLELVGL EMDLPVIMFS ANDDPKMVLK GITHGACDYL  120
LKPVILKEVQ TIWQHVIRKK KTSKRSNHDV RNSDGGNGID SALTGNSDQN DRPSSSRKRK  180
EKNEDDVDEE NEDDQDNDDP TAQKKARVVW TPALHRKFVA AVNQLGIHTN MAALLGSSLD  240
TSYLGMTSLG GSTQFHNNPF KSFASGGSRS NIFNTPTNVN MHGFSSSGTP QLNHTHNGQL  300
KFQSAMTHDN LNNVLKMPMS SAGLDQLLHS KGITVSPNIQ NMTNKLPDYY KPKVTMSCTN  360
NALILESNPQ EKQVAEGYKN LASQNSQYLP SLENRRCNGI WSNTMQFPGT NSYLQREGFG  420
HGSASHKDNR NAAMPHTEAY ELCNNVPFQG RDNNHNNHDG SYHSSHVVGS SIGSMNPAVN  480
AVEPEENLDY NYCDSLQMKR DRTTELTEGS SFKPHQAYMM NNQMKFQNSG ISNNPGSLED  540
AFRDMIKQKQ LYANFSGGTM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RKRKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498785.10.0two-component response regulator ARR10 isoform X1
TrEMBLA0A2K3PN470.0A0A2K3PN47_TRIPR; Two-component response regulator
STRINGXP_004498785.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-73response regulator 12