PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28955
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 431aa    MW: 46788 Da    PI: 8.7604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28955genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20188237255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Tp57577_TGAC_v2_mRNA28955 188 RYRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFDTAESAARAYDEAALRFRG 237
                                7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-33188246IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22188246IPR016177DNA-binding domain
PROSITE profilePS5103225.567188245IPR001471AP2/ERF domain
SMARTSM003801.8E-38188251IPR001471AP2/ERF domain
PfamPF008472.9E-14188237IPR001471AP2/ERF domain
PRINTSPR003671.3E-11189200IPR001471AP2/ERF domain
CDDcd000181.92E-28196247No hitNo description
PRINTSPR003671.3E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSLLTVAHQR GSGEFTGFTV KRDGDNDGGS SSTSQSLNFN QMQSNSSMVY NGDRELTQMV  60
SALTHAASSE SNQMSSNEWI QRSGFPNASS SSSSYSSGSG SGSGFVMTSG SWSGNKRGRD  120
EESSDSNNHF LQQAVPKLFR TVMVPSQGQG QGESSSSVTE EAPTTRTTIA TATSTAASLE  180
DSSQQRRRYR GVRQRPWGKW AAEIRDPHKA QRVWLGTFDT AESAARAYDE AALRFRGSRA  240
KLNFPENVRS IMPPPPQPQQ QPRPQPQSLS QLQSFSAAAV PSRTPQPPVQ GSSDLIRDYL  300
EYSQILQSSG DFQLQQMQQQ QQMQQQEHAS NLVQQWYYNS QLAALQSHSM LSTSSSLSLP  360
SNISPPMATS LPSTQFSTSS SSFPLFSSQQ MGFFRPPENR PHGGGRGGGT EFPPSTWSDT  420
SGHPPPPPYG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-23187248163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28955
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509782e-60AC150978.15 Medicago truncatula clone mth2-66m17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451886.11e-129ethylene-responsive transcription factor ERF110
TrEMBLA0A2K3PKL30.0A0A2K3PKL3_TRIPR; Ethylene-responsive transcription factor erf110-like protein
STRINGGLYMA16G27950.12e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-20ethylene response factor 110