PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28980
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 94aa    MW: 10586 Da    PI: 9.4528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28980genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-0721601655
                               HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                               i +   +Lr+l+P+ + + +s K+  + +L+++++YI++Lq
  Tp57577_TGAC_v2_mRNA28980 21 IIDLVCKLRQLIPEiR-NRRSDKVPASKVLQETCNYIRNLQ 60
                               5566689*******77.89*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.981559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-82175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-52160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-92379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSRQQS GGSTRISDDQ IIDLVCKLRQ LIPEIRNRRS DKVPASKVLQ ETCNYIRNLQ  60
REVDDLSMRL SQLLATIDAD SAEASIIRSL LNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12838RQLIPEIRNRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487622e-63AC148762.2 Medicago truncatula clone mth2-15p5, complete sequence.
GenBankAC1663132e-63AC166313.2 Medicago truncatula chromosome 7 clone mte1-4j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621179.17e-58transcription factor PRE6
SwissprotQ9LJX11e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLG7KZY52e-56G7KZY5_MEDTR; Putative transcription factor bHLH family
STRINGAES773973e-57(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-37bHLH family protein