PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28988
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 331aa    MW: 36880.3 Da    PI: 7.3822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28988genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
  Tp57577_TGAC_v2_mRNA28988 14 KGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYL 61
                               79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
  Tp57577_TGAC_v2_mRNA28988  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.733965IPR017930Myb domain
SuperFamilySSF466892.52E-3111108IPR009057Homeodomain-like
SMARTSM007172.8E-151363IPR001005SANT/Myb domain
PfamPF002492.5E-161461IPR001005SANT/Myb domain
CDDcd001674.21E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129420.3666116IPR017930Myb domain
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002499.7E-1567112IPR001005SANT/Myb domain
CDDcd001676.26E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTKTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TGKNNSEGNF EEENFSASQR IPRGQWERRL QTDIHMAKKA LNEALSVSPK KLSSDFSTSN  180
LSNSNNSISS TKELPQSSCY ASSADNIAKL LKGWMKNPIK SSRSTNSSVA QNSFNNIDCV  240
SSSGTKGESE ILSETFESLF GFESLESLES SNSEFSHQSL SPDATVLQDE SKPEVGSETM  300
PFSLLEKWLL DEACCPEKVG LGCGDHAQVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28988
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487620.0AC148762.2 Medicago truncatula clone mth2-15p5, complete sequence.
GenBankAC1663130.0AC166313.2 Medicago truncatula chromosome 7 clone mte1-4j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621186.20.0myb-related protein 306
SwissprotP813921e-109MYB06_ANTMA; Myb-related protein 306
TrEMBLQ2HVT20.0Q2HVT2_MEDTR; Homeodomain-related
STRINGGLYMA18G49360.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.18e-95myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]