PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2900
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 157aa    MW: 17365.7 Da    PI: 4.3341
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2900genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.21e-231193385
                     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                              ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e++ +
  Tp57577_TGAC_v2_mRNA2900 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFSDYIEEVCA 93
                              6899**************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-388140IPR009072Histone-fold
SuperFamilySSF471131.18E-3412143IPR009072Histone-fold
PfamPF008082.5E-201479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE  60
VCSREDKRTI APEHVLKALQ VLGFSDYIEE VCAAYEQHKL ETMQDSLKGG KWSNAAEMTE  120
EEALAEQQRM FAEARARMNG GAIASKQPDG DQNLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-321213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1339901e-169BT133990.1 Medicago truncatula clone JCVI-FLMt-2B5 unknown mRNA.
GenBankJQ9182781e-169JQ918278.1 Medicago truncatula nuclear transcription factor Y subunit B5 (NF-YB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508592.11e-106protein Dr1 homolog isoform X1
SwissprotP495929e-89NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1S2YR431e-104A0A1S2YR43_CICAR; protein Dr1 homolog isoform X1
STRINGXP_004508592.11e-105(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.24e-83nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]