PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29008
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 248aa    MW: 28696.4 Da    PI: 8.0865
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2527117191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYneY+k++GF +r+++ +ksk +g  t+r+f+C keg+r  +k++ + +  +raetrtgC a++++++++  gk++v ++  
  Tp57577_TGAC_v2_mRNA29008  27 DFYNEYSKRIGFGIRREYANKSKVDGVLTSRRFTCFKEGTRIVDKRR-HPTTDPRAETRTGCPARMVISLDRkIGKYKVVDFIA 109
                                6******************************************9999.99********************9989********** PP

                       FAR1  84 eHnHelap 91 
                                +HnH+l+p
  Tp57577_TGAC_v2_mRNA29008 110 QHNHPLQP 117
                                *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2127117IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.09863116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MCNGQESIAN SEPHLAMKFE YEASAYDFYN EYSKRIGFGI RREYANKSKV DGVLTSRRFT  60
CFKEGTRIVD KRRHPTTDPR AETRTGCPAR MVISLDRKIG KYKVVDFIAQ HNHPLQPPEH  120
VHMIRSHRRI SEAQASQIVL GDESGLRPKD LHEYISKQAG GIETVGFTRE DLKNYLKTKR  180
KQSLKYGEVG ALMMHFKQES ENPSFFYDFQ MDMDEEITNI FWADAQMIND YGYFGDVITF  240
DTTYKTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573760.0AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630916.11e-151protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3NJ060.0A0A2K3NJ06_TRIPR; Protein FAR1-related sequence 5-like
STRINGXP_004503202.11e-150(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-56FAR1-related sequence 5