PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29038
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22747.9 Da    PI: 9.0943
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.5e-211664149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+i+n++  qv fskRrng++ KA+EL +LC+a va+iifs++gk++ +
  Tp57577_TGAC_v2_mRNA29038 16 KKISNERSMQVAFSKRRNGLFQKAYELFTLCGAYVALIIFSPSGKVFSF 64
                               68********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-29867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.721868IPR002100Transcription factor, MADS-box
CDDcd002653.73E-35976No hitNo description
SuperFamilySSF554551.96E-26981IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-211030IPR002100Transcription factor, MADS-box
PfamPF003199.0E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-213045IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-214566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSGGKKTRGR QKIEIKKISN ERSMQVAFSK RRNGLFQKAY ELFTLCGAYV ALIIFSPSGK  60
VFSFGNPDLY TVIDRYFSRV PPVNNNIRQF IEGFPSTNMR DLNAQLTQAN DALDREKKRG  120
DDLSHICKMI EDPSWWASPI DEMNKDQLEL LKKALEELNK NVAEPADRLE ILGAPAQTQQ  180
AQMSPPHVFQ NPMGGGGGEN GPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16982275MEF2 CHIMERA
6byy_B1e-16982275MEF2 CHIMERA
6byy_C1e-16982275MEF2 CHIMERA
6byy_D1e-16982275MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.11e-84agamous-like MADS-box protein AGL62
TrEMBLA0A2K3NHW41e-118A0A2K3NHW4_TRIPR; Agamous-like mads-box protein agl62-like
STRINGXP_004496799.15e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-39AGAMOUS-like 62