PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29070

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 245aa MW: 28038.4 Da PI: 9.6868

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29070	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.6	1.7e-16	156	243	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v+ +l lp +f+++h ++++ +tl de+g++ ++ ++++ l++GW++F+ a++L +gD ++F+l Tp57577_TGAC_v2_mRNA29070 156 FIKSMLQSHVTGGFWLGLPTHFCRTHL--PTRDEAMTLIDEDGEESPTTY--LAHKRG--LSAGWRGFAIAHNLVDGDALIFEL 233 89**********************5..346678***********..677766..9********************* PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 ++r++f +v++ Tp57577_TGAC_v2_mRNA29070 234 VNRTTF--KVMI 243 998888..6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-20	148	244	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.43E-23	149	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.97E-25	154	244	No hit	No description
PROSITE profile	PS50863	11.984	156	244	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-14	156	243	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-16	156	242	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVAAVAAASY EDTRRKRMEE NKKRMEALNL HQLSQSLHKS SSPISKPSPS KPRTVRKELV 60 VVRRSGRVAN LPAPIYKEVL IDRVILPRNR ISRYFPFLNI LLWIQIELIF FCVCRGGYNM 120 YRDYSKRVYA SDEAREEALE KAEKLQSDLD SDHPIFIKSM LQSHVTGGFW LGLPTHFCRT 180 HLPTRDEAMT LIDEDGEESP TTYLAHKRGL SAGWRGFAIA HNLVDGDALI FELVNRTTFK 240 VMIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501577.1	1e-131	B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	3e-70	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1S2Y9P2	1e-130	A0A1S2Y9P2_CICAR; B3 domain-containing protein At5g42700-like
STRING	XP_004501577.1	1e-131	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-46	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29070

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]