PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2915

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 134aa MW: 15451 Da PI: 10.5172

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2915	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.5	2.4e-13	40	132	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvv 81 ff++l+++ +l ++r+++p + + ++++k ++l+ + rsW+vkl +++++r +++GW+ F+ + gLk gD++v Tp57577_TGAC_v2_mRNA2915 40 FFTILIKPINLVENRVYVPSLKV-VI---ENRDKNVKLQ-IEKRSWNVKLLRfyytTNHGRR--FSAGWSLFACESGLKPGDVCV 117 66666666667777777776554.22...2233445533.4669****444776666666..899************** PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+l+++++ ++v+v Tp57577_TGAC_v2_mRNA2915 118 FELINKTDLVFKVHV 132 *988888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-15	33	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-15	34	133	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.744	40	133	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-4	40	131	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-11	40	133	IPR003340	B3 DNA binding domain
CDD	cd10017	4.32E-13	40	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MNFIFCEIKK NSQRTASSMN WLKGAKAQEV AKNFNSSNPF FTILIKPINL VENRVYVPSL 60 KVVIENRDKN VKLQIEKRSW NVKLLRFYYT TNHGRRFSAG WSLFACESGL KPGDVCVFEL 120 INKTDLVFKV HVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	3e-14	26	133	34	140	B3 domain-containing transcription factor VRN1
4i1k_B	3e-14	26	133	34	140	B3 domain-containing transcription factor VRN1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2915

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500187.1	4e-56	B3 domain-containing transcription factor VRN1-like
TrEMBL	A0A2K3PKX3	4e-62	A0A2K3PKX3_TRIPR; B3 domain-containing protein
STRING	XP_004500187.1	1e-55	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-14	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2915