PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29165
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 311aa    MW: 35339.6 Da    PI: 6.014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29165genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08145190555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h ++Er+RR+++ + +  L  ++P +     kK++K  +L +Av Y k+Lq
  Tp57577_TGAC_v2_mRNA29165 145 HLMAERKRRRELTENIISLSAMIPGL-----KKMDKCYVLSEAVSYTKQLQ 190
                                889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-12140202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.557140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12144200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-6145194No hitNo description
PfamPF000102.6E-6145190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-8146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEESLENLIS YMEMEDEVLN PNSFDEQEFL KDIILDQPEC EPSSYLCSNK IQNIGTINGE  60
GIATSPINSI LSFDETSLIH KSTSSNSIMS LERSNVGSPP ASYLLSFDNS SVEPIVEPMS  120
HKKRTIVKDK TTKKVKRSCE TVQDHLMAER KRRRELTENI ISLSAMIPGL KKMDKCYVLS  180
EAVSYTKQLQ NRIKELENQN IVNSAIFKWK SKGSSNKKKY LESLLEIEAR VVEKKVIIRI  240
HCEKQKDIVL KIHELLEKFN LTITSSSILP FGASILVINI FAQMDEEHSI TMDDIVKNLK  300
NYLLEACESR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29165
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4096471e-172KM409647.1 Medicago truncatula triterpene saponin activating regulator 1 (TSAR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624235.11e-149transcription factor bHLH18
TrEMBLG7KSG41e-148G7KSG4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES804531e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.15e-35bHLH family protein