PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29233
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 183aa    MW: 20413.1 Da    PI: 4.0932
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29233genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.31.4e-1716971898
                      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                               + e+P +r+kki+  dedvk++s+ea  l+sk+ elf+  l+ +s   a e+kr+t+k   i  av+r   i dfl+d  p 
  Tp57577_TGAC_v2_mRNA29233 16 EPEFPKSRVKKIMTLDEDVKRVSSEALFLVSKSTELFLQLLAEKSAEVAIEKKRKTVKLEHIRIAVKRNRpISDFLLDSLPM 97
                               679***************************************************************9875489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.5E-191784IPR009072Histone-fold
PfamPF008081.1E-191881IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-201996IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVMVMAEEEE NALSIEPEFP KSRVKKIMTL DEDVKRVSSE ALFLVSKSTE LFLQLLAEKS  60
AEVAIEKKRK TVKLEHIRIA VKRNRPISDF LLDSLPMPSE TTKSDKPVVV ADRPKSSEAQ  120
AQVEAEVEAQ VEAEVEAQIE AQVEAQLEDE IEVQVEAQLE DEIEVQVEAQ ASEPVPEPME  180
ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190560.12e-69nuclear transcription factor Y subunit C-4
TrEMBLA0A2K3NUG61e-114A0A2K3NUG6_TRIPR; Nuclear transcription factor Y subunit C-4-like protein
STRINGXP_004502298.17e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.19e-39nuclear factor Y, subunit C13